Merkle trees

Merkle tree is a hash tree, where leaves are hashes. And each intermediate node is a hash of its children. Root node is a hash of values in its children node. Thus to know the difference between two hash trees, it's just enough to compare the root nodes of those trees. It's also easy to find the actual difference between two trees: just traverse them top-to-bottom and find the nodes with different hashes. This is how Merkle tree helps to reduce the amount of data passed between two sources.

Merkle trees are used as anti-entropy mechanism that helps to detect cases of divergence between data stored in multiple location. Merkle trees, for example, are used by Dynamo and Cassandra to find the cases when replicas have different versions of data. Merkle trees are also an awesome way to detect changes before syncing up data, which is one of the primary tasks for Dropbox, Chrome Backup, Google Drive, BitTorrent Sync etc.

Merkle trees do not rely on timestamps, but on actual data differences. This makes hash trees a wonderful structure to synchronize data between source and target with minimal effort of detecting actual changes.

For example, assume that there is a backend B, and N clients, each client maintains copy of the data (like Dropbox, BitTorrent Sync, Google Drive etc.) And some of the clients changed the data locally, and uploads them to backend B. Then each client can determine the actual change and do exchange of only necessary data with backend.

Hash trees are used by Git and Bitcoin. As I mentioned before, Dynamo, Cassandra and Riak are using Merkle trees for anti-entropy as well.Merkle trees are also used in cryptography for message signatures (search for Lamport signature).

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